Reading and working with FireModis HDF files in R












1















I`m trying to read a Modis Fire HDF file using the instructions provided by the hdfeos information center (https://hdfeos.org/software/r.php), this is the code:



sds<-get_subdatasets("modis_file")
#Modis_fire/MCD64A1.A2000306.h12v11.006.2017012010432.hdf"
d5<-readGDAL(sds[1],options=c("RASTERXDIM=4","RASTERYDIM=3","RASTERBDIM=2","RASTER4DIM=1","RASTER5DIM=0"))
#"HDF4_EOS:EOS_GRID:/Modis_fire/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date"


However, I get this error:



option 0: RASTERXDIM=4
option 1: RASTERYDIM=3
option 2: RASTERBDIM=2
option 3: RASTER4DIM=1
option 4: RASTER5DIM=0
Error in .local(.Object, ...) :


I don´t want to translate and write the HDF in other formats because I expect to do some operations like merge and crop before writing it converting:



r<-raster(d5)


Any suggestion?










share|improve this question



























    1















    I`m trying to read a Modis Fire HDF file using the instructions provided by the hdfeos information center (https://hdfeos.org/software/r.php), this is the code:



    sds<-get_subdatasets("modis_file")
    #Modis_fire/MCD64A1.A2000306.h12v11.006.2017012010432.hdf"
    d5<-readGDAL(sds[1],options=c("RASTERXDIM=4","RASTERYDIM=3","RASTERBDIM=2","RASTER4DIM=1","RASTER5DIM=0"))
    #"HDF4_EOS:EOS_GRID:/Modis_fire/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date"


    However, I get this error:



    option 0: RASTERXDIM=4
    option 1: RASTERYDIM=3
    option 2: RASTERBDIM=2
    option 3: RASTER4DIM=1
    option 4: RASTER5DIM=0
    Error in .local(.Object, ...) :


    I don´t want to translate and write the HDF in other formats because I expect to do some operations like merge and crop before writing it converting:



    r<-raster(d5)


    Any suggestion?










    share|improve this question

























      1












      1








      1








      I`m trying to read a Modis Fire HDF file using the instructions provided by the hdfeos information center (https://hdfeos.org/software/r.php), this is the code:



      sds<-get_subdatasets("modis_file")
      #Modis_fire/MCD64A1.A2000306.h12v11.006.2017012010432.hdf"
      d5<-readGDAL(sds[1],options=c("RASTERXDIM=4","RASTERYDIM=3","RASTERBDIM=2","RASTER4DIM=1","RASTER5DIM=0"))
      #"HDF4_EOS:EOS_GRID:/Modis_fire/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date"


      However, I get this error:



      option 0: RASTERXDIM=4
      option 1: RASTERYDIM=3
      option 2: RASTERBDIM=2
      option 3: RASTER4DIM=1
      option 4: RASTER5DIM=0
      Error in .local(.Object, ...) :


      I don´t want to translate and write the HDF in other formats because I expect to do some operations like merge and crop before writing it converting:



      r<-raster(d5)


      Any suggestion?










      share|improve this question














      I`m trying to read a Modis Fire HDF file using the instructions provided by the hdfeos information center (https://hdfeos.org/software/r.php), this is the code:



      sds<-get_subdatasets("modis_file")
      #Modis_fire/MCD64A1.A2000306.h12v11.006.2017012010432.hdf"
      d5<-readGDAL(sds[1],options=c("RASTERXDIM=4","RASTERYDIM=3","RASTERBDIM=2","RASTER4DIM=1","RASTER5DIM=0"))
      #"HDF4_EOS:EOS_GRID:/Modis_fire/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date"


      However, I get this error:



      option 0: RASTERXDIM=4
      option 1: RASTERYDIM=3
      option 2: RASTERBDIM=2
      option 3: RASTER4DIM=1
      option 4: RASTER5DIM=0
      Error in .local(.Object, ...) :


      I don´t want to translate and write the HDF in other formats because I expect to do some operations like merge and crop before writing it converting:



      r<-raster(d5)


      Any suggestion?







      r gdal r-raster hdf






      share|improve this question













      share|improve this question











      share|improve this question




      share|improve this question










      asked Jan 3 at 14:34









      JaimeJaime

      444




      444
























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          1














          Reading the documentation in the link provided, you're trying to create a 5-dimensional dataset.



          And my best guess is, that you're using normal GDAL (as opposed to this GEE?) which seems to be the cause for your error (according to the link):




          The RASTERXDIM, ..., RASTER4DIM options allow you to access 5-dimensional dataset and they are available only in GEE. If you use regular GDAL, you cannot access the dataset correctly.




          But if you just want to read and process the HDF files, this works just fine:



          library(MODIS)

          ## Note: I'm using the MODIS package to download the HDF file (not necessary if you have it on disk.

          # the hdf variable will be the path to the file
          hdf <- getHdf(HdfName = 'MCD64A1.A2000306.h12v11.006.2017012010432.hdf',forceDownload=T)

          # print the subdatasets

          gdalUtils::get_subdatasets(hdf)

          # [1] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date"
          # [2] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date Uncertainty"
          # [3] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:QA"
          # [4] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:First Day"
          # [5] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Last Day"

          sds <- gdalUtils::get_subdatasets(hdf)

          r <- raster(sds[1])

          # check raster output
          r

          # class : RasterLayer
          # dimensions : 2400, 2400, 5760000 (nrow, ncol, ncell)
          # resolution : 463.3127, 463.3127 (x, y)
          # extent : -6671703, -5559753, -3335852, -2223901 (xmin, xmax, ymin, ymax)
          # coord. ref. : +proj=sinu +lon_0=0 +x_0=0 +y_0=0 +a=6371007.181 +b=6371007.181 +units=m +no_defs
          # data source : HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date
          # names : MCD64A1.A2000306.h12v11.006.2017012010432.hdf.MOD_Grid_Monthly_500m_DB_BA.Burn_Date
          # values : -32768, 32767 (min, max)





          share|improve this answer


























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            1 Answer
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            active

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            active

            oldest

            votes






            active

            oldest

            votes









            1














            Reading the documentation in the link provided, you're trying to create a 5-dimensional dataset.



            And my best guess is, that you're using normal GDAL (as opposed to this GEE?) which seems to be the cause for your error (according to the link):




            The RASTERXDIM, ..., RASTER4DIM options allow you to access 5-dimensional dataset and they are available only in GEE. If you use regular GDAL, you cannot access the dataset correctly.




            But if you just want to read and process the HDF files, this works just fine:



            library(MODIS)

            ## Note: I'm using the MODIS package to download the HDF file (not necessary if you have it on disk.

            # the hdf variable will be the path to the file
            hdf <- getHdf(HdfName = 'MCD64A1.A2000306.h12v11.006.2017012010432.hdf',forceDownload=T)

            # print the subdatasets

            gdalUtils::get_subdatasets(hdf)

            # [1] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date"
            # [2] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date Uncertainty"
            # [3] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:QA"
            # [4] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:First Day"
            # [5] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Last Day"

            sds <- gdalUtils::get_subdatasets(hdf)

            r <- raster(sds[1])

            # check raster output
            r

            # class : RasterLayer
            # dimensions : 2400, 2400, 5760000 (nrow, ncol, ncell)
            # resolution : 463.3127, 463.3127 (x, y)
            # extent : -6671703, -5559753, -3335852, -2223901 (xmin, xmax, ymin, ymax)
            # coord. ref. : +proj=sinu +lon_0=0 +x_0=0 +y_0=0 +a=6371007.181 +b=6371007.181 +units=m +no_defs
            # data source : HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date
            # names : MCD64A1.A2000306.h12v11.006.2017012010432.hdf.MOD_Grid_Monthly_500m_DB_BA.Burn_Date
            # values : -32768, 32767 (min, max)





            share|improve this answer






























              1














              Reading the documentation in the link provided, you're trying to create a 5-dimensional dataset.



              And my best guess is, that you're using normal GDAL (as opposed to this GEE?) which seems to be the cause for your error (according to the link):




              The RASTERXDIM, ..., RASTER4DIM options allow you to access 5-dimensional dataset and they are available only in GEE. If you use regular GDAL, you cannot access the dataset correctly.




              But if you just want to read and process the HDF files, this works just fine:



              library(MODIS)

              ## Note: I'm using the MODIS package to download the HDF file (not necessary if you have it on disk.

              # the hdf variable will be the path to the file
              hdf <- getHdf(HdfName = 'MCD64A1.A2000306.h12v11.006.2017012010432.hdf',forceDownload=T)

              # print the subdatasets

              gdalUtils::get_subdatasets(hdf)

              # [1] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date"
              # [2] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date Uncertainty"
              # [3] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:QA"
              # [4] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:First Day"
              # [5] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Last Day"

              sds <- gdalUtils::get_subdatasets(hdf)

              r <- raster(sds[1])

              # check raster output
              r

              # class : RasterLayer
              # dimensions : 2400, 2400, 5760000 (nrow, ncol, ncell)
              # resolution : 463.3127, 463.3127 (x, y)
              # extent : -6671703, -5559753, -3335852, -2223901 (xmin, xmax, ymin, ymax)
              # coord. ref. : +proj=sinu +lon_0=0 +x_0=0 +y_0=0 +a=6371007.181 +b=6371007.181 +units=m +no_defs
              # data source : HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date
              # names : MCD64A1.A2000306.h12v11.006.2017012010432.hdf.MOD_Grid_Monthly_500m_DB_BA.Burn_Date
              # values : -32768, 32767 (min, max)





              share|improve this answer




























                1












                1








                1







                Reading the documentation in the link provided, you're trying to create a 5-dimensional dataset.



                And my best guess is, that you're using normal GDAL (as opposed to this GEE?) which seems to be the cause for your error (according to the link):




                The RASTERXDIM, ..., RASTER4DIM options allow you to access 5-dimensional dataset and they are available only in GEE. If you use regular GDAL, you cannot access the dataset correctly.




                But if you just want to read and process the HDF files, this works just fine:



                library(MODIS)

                ## Note: I'm using the MODIS package to download the HDF file (not necessary if you have it on disk.

                # the hdf variable will be the path to the file
                hdf <- getHdf(HdfName = 'MCD64A1.A2000306.h12v11.006.2017012010432.hdf',forceDownload=T)

                # print the subdatasets

                gdalUtils::get_subdatasets(hdf)

                # [1] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date"
                # [2] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date Uncertainty"
                # [3] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:QA"
                # [4] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:First Day"
                # [5] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Last Day"

                sds <- gdalUtils::get_subdatasets(hdf)

                r <- raster(sds[1])

                # check raster output
                r

                # class : RasterLayer
                # dimensions : 2400, 2400, 5760000 (nrow, ncol, ncell)
                # resolution : 463.3127, 463.3127 (x, y)
                # extent : -6671703, -5559753, -3335852, -2223901 (xmin, xmax, ymin, ymax)
                # coord. ref. : +proj=sinu +lon_0=0 +x_0=0 +y_0=0 +a=6371007.181 +b=6371007.181 +units=m +no_defs
                # data source : HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date
                # names : MCD64A1.A2000306.h12v11.006.2017012010432.hdf.MOD_Grid_Monthly_500m_DB_BA.Burn_Date
                # values : -32768, 32767 (min, max)





                share|improve this answer















                Reading the documentation in the link provided, you're trying to create a 5-dimensional dataset.



                And my best guess is, that you're using normal GDAL (as opposed to this GEE?) which seems to be the cause for your error (according to the link):




                The RASTERXDIM, ..., RASTER4DIM options allow you to access 5-dimensional dataset and they are available only in GEE. If you use regular GDAL, you cannot access the dataset correctly.




                But if you just want to read and process the HDF files, this works just fine:



                library(MODIS)

                ## Note: I'm using the MODIS package to download the HDF file (not necessary if you have it on disk.

                # the hdf variable will be the path to the file
                hdf <- getHdf(HdfName = 'MCD64A1.A2000306.h12v11.006.2017012010432.hdf',forceDownload=T)

                # print the subdatasets

                gdalUtils::get_subdatasets(hdf)

                # [1] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date"
                # [2] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date Uncertainty"
                # [3] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:QA"
                # [4] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:First Day"
                # [5] "HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Last Day"

                sds <- gdalUtils::get_subdatasets(hdf)

                r <- raster(sds[1])

                # check raster output
                r

                # class : RasterLayer
                # dimensions : 2400, 2400, 5760000 (nrow, ncol, ncell)
                # resolution : 463.3127, 463.3127 (x, y)
                # extent : -6671703, -5559753, -3335852, -2223901 (xmin, xmax, ymin, ymax)
                # coord. ref. : +proj=sinu +lon_0=0 +x_0=0 +y_0=0 +a=6371007.181 +b=6371007.181 +units=m +no_defs
                # data source : HDF4_EOS:EOS_GRID:/tmp/Rtmp9QhqAG/MODIS_ARC/MODIS/MCD64A1.006/2000.11.01/MCD64A1.A2000306.h12v11.006.2017012010432.hdf:MOD_Grid_Monthly_500m_DB_BA:Burn Date
                # names : MCD64A1.A2000306.h12v11.006.2017012010432.hdf.MOD_Grid_Monthly_500m_DB_BA.Burn_Date
                # values : -32768, 32767 (min, max)






                share|improve this answer














                share|improve this answer



                share|improve this answer








                edited Jan 8 at 9:41

























                answered Jan 8 at 9:36









                ValVal

                3,2632929




                3,2632929
































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