Using Apache math for linear regression with weights












1















I've been using Apache math for a while to do a multiple linear regression using OLSMultipleLinearRegression. Now I need to extend my solution to include a weighting factor for each data point.



I'm trying to replicate the MATLAB function fitlm.



I have a MATLAB call like:



table_data = table(points_scored, height, weight, age);
model = fitlm( table_data, 'points_scored ~ -1, height, weight, age', 'Weights', data_weights)


From 'model' I get the regression coefficients for height, weight, age.



In Java the code I have now is (roughly):



double variables = double[grades.length][3];
// Fill in variables for height, weight, age,
...

OLSMultipleLinearRegression regression = new OLSMultipleLinearRegression();
regression.setNoIntercept(true);
regression.newSampleData(points_scored, variables);


There does not appear to be a way to add weightings to OLSMultipleLinearRegression. There does appear to be a way to add weights to the LeastSquaresBuilder. However I'm having trouble figuring out exactly how to use this. My biggest problem (I think) is creating the jacobians that are expected.



Here is most of what I tried:



double points_scored = //fill in points scored
double height = //fill in
double weight = //fill in
double age = // fill in

MultivariateJacobianFunction distToResidual= coeffs -> {
RealVector value = new ArrayRealVector(points_scored.length);
RealMatrix jacobian = new Array2DRowRealMatrix(points_scored.length, 3);

for (int i = 0; i < measures.length; ++i) {
double residual = points_scored[i];
residual -= coeffs.getEntry(0) * height[i];
residual -= coeffs.getEntry(1) * weight[i];
residual -= coeffs.getEntry(2) * age[i];
value.setEntry(i, residual);
//No idea how to set up the jacobian here
}

return new Pair<RealVector, RealMatrix>(value, jacobian);
};

double prescribedDistancesToLine = new double[measures.length];
Arrays.fill(prescribedDistancesToLine, 0);
double starts = new double {1, 1, 1};

LeastSquaresProblem problem = new LeastSquaresBuilder().
start(starts).
model(distToResidual).
target(prescribedDistancesToLine).
lazyEvaluation(false).
maxEvaluations(1000).
maxIterations(1000).
build();
LeastSquaresOptimizer.Optimum optimum = new LevenbergMarquardtOptimizer().optimize(problem);


Since I don't know how to make the jacobian values I've just been stabbing in the dark and getting coefficient nowhere near the MATLAB answers. Once I get this part working I know that adding the weights should be a pretty straight forward extra line int the LeastSquaresBuilder.



Thanks for any help in advance!










share|improve this question



























    1















    I've been using Apache math for a while to do a multiple linear regression using OLSMultipleLinearRegression. Now I need to extend my solution to include a weighting factor for each data point.



    I'm trying to replicate the MATLAB function fitlm.



    I have a MATLAB call like:



    table_data = table(points_scored, height, weight, age);
    model = fitlm( table_data, 'points_scored ~ -1, height, weight, age', 'Weights', data_weights)


    From 'model' I get the regression coefficients for height, weight, age.



    In Java the code I have now is (roughly):



    double variables = double[grades.length][3];
    // Fill in variables for height, weight, age,
    ...

    OLSMultipleLinearRegression regression = new OLSMultipleLinearRegression();
    regression.setNoIntercept(true);
    regression.newSampleData(points_scored, variables);


    There does not appear to be a way to add weightings to OLSMultipleLinearRegression. There does appear to be a way to add weights to the LeastSquaresBuilder. However I'm having trouble figuring out exactly how to use this. My biggest problem (I think) is creating the jacobians that are expected.



    Here is most of what I tried:



    double points_scored = //fill in points scored
    double height = //fill in
    double weight = //fill in
    double age = // fill in

    MultivariateJacobianFunction distToResidual= coeffs -> {
    RealVector value = new ArrayRealVector(points_scored.length);
    RealMatrix jacobian = new Array2DRowRealMatrix(points_scored.length, 3);

    for (int i = 0; i < measures.length; ++i) {
    double residual = points_scored[i];
    residual -= coeffs.getEntry(0) * height[i];
    residual -= coeffs.getEntry(1) * weight[i];
    residual -= coeffs.getEntry(2) * age[i];
    value.setEntry(i, residual);
    //No idea how to set up the jacobian here
    }

    return new Pair<RealVector, RealMatrix>(value, jacobian);
    };

    double prescribedDistancesToLine = new double[measures.length];
    Arrays.fill(prescribedDistancesToLine, 0);
    double starts = new double {1, 1, 1};

    LeastSquaresProblem problem = new LeastSquaresBuilder().
    start(starts).
    model(distToResidual).
    target(prescribedDistancesToLine).
    lazyEvaluation(false).
    maxEvaluations(1000).
    maxIterations(1000).
    build();
    LeastSquaresOptimizer.Optimum optimum = new LevenbergMarquardtOptimizer().optimize(problem);


    Since I don't know how to make the jacobian values I've just been stabbing in the dark and getting coefficient nowhere near the MATLAB answers. Once I get this part working I know that adding the weights should be a pretty straight forward extra line int the LeastSquaresBuilder.



    Thanks for any help in advance!










    share|improve this question

























      1












      1








      1








      I've been using Apache math for a while to do a multiple linear regression using OLSMultipleLinearRegression. Now I need to extend my solution to include a weighting factor for each data point.



      I'm trying to replicate the MATLAB function fitlm.



      I have a MATLAB call like:



      table_data = table(points_scored, height, weight, age);
      model = fitlm( table_data, 'points_scored ~ -1, height, weight, age', 'Weights', data_weights)


      From 'model' I get the regression coefficients for height, weight, age.



      In Java the code I have now is (roughly):



      double variables = double[grades.length][3];
      // Fill in variables for height, weight, age,
      ...

      OLSMultipleLinearRegression regression = new OLSMultipleLinearRegression();
      regression.setNoIntercept(true);
      regression.newSampleData(points_scored, variables);


      There does not appear to be a way to add weightings to OLSMultipleLinearRegression. There does appear to be a way to add weights to the LeastSquaresBuilder. However I'm having trouble figuring out exactly how to use this. My biggest problem (I think) is creating the jacobians that are expected.



      Here is most of what I tried:



      double points_scored = //fill in points scored
      double height = //fill in
      double weight = //fill in
      double age = // fill in

      MultivariateJacobianFunction distToResidual= coeffs -> {
      RealVector value = new ArrayRealVector(points_scored.length);
      RealMatrix jacobian = new Array2DRowRealMatrix(points_scored.length, 3);

      for (int i = 0; i < measures.length; ++i) {
      double residual = points_scored[i];
      residual -= coeffs.getEntry(0) * height[i];
      residual -= coeffs.getEntry(1) * weight[i];
      residual -= coeffs.getEntry(2) * age[i];
      value.setEntry(i, residual);
      //No idea how to set up the jacobian here
      }

      return new Pair<RealVector, RealMatrix>(value, jacobian);
      };

      double prescribedDistancesToLine = new double[measures.length];
      Arrays.fill(prescribedDistancesToLine, 0);
      double starts = new double {1, 1, 1};

      LeastSquaresProblem problem = new LeastSquaresBuilder().
      start(starts).
      model(distToResidual).
      target(prescribedDistancesToLine).
      lazyEvaluation(false).
      maxEvaluations(1000).
      maxIterations(1000).
      build();
      LeastSquaresOptimizer.Optimum optimum = new LevenbergMarquardtOptimizer().optimize(problem);


      Since I don't know how to make the jacobian values I've just been stabbing in the dark and getting coefficient nowhere near the MATLAB answers. Once I get this part working I know that adding the weights should be a pretty straight forward extra line int the LeastSquaresBuilder.



      Thanks for any help in advance!










      share|improve this question














      I've been using Apache math for a while to do a multiple linear regression using OLSMultipleLinearRegression. Now I need to extend my solution to include a weighting factor for each data point.



      I'm trying to replicate the MATLAB function fitlm.



      I have a MATLAB call like:



      table_data = table(points_scored, height, weight, age);
      model = fitlm( table_data, 'points_scored ~ -1, height, weight, age', 'Weights', data_weights)


      From 'model' I get the regression coefficients for height, weight, age.



      In Java the code I have now is (roughly):



      double variables = double[grades.length][3];
      // Fill in variables for height, weight, age,
      ...

      OLSMultipleLinearRegression regression = new OLSMultipleLinearRegression();
      regression.setNoIntercept(true);
      regression.newSampleData(points_scored, variables);


      There does not appear to be a way to add weightings to OLSMultipleLinearRegression. There does appear to be a way to add weights to the LeastSquaresBuilder. However I'm having trouble figuring out exactly how to use this. My biggest problem (I think) is creating the jacobians that are expected.



      Here is most of what I tried:



      double points_scored = //fill in points scored
      double height = //fill in
      double weight = //fill in
      double age = // fill in

      MultivariateJacobianFunction distToResidual= coeffs -> {
      RealVector value = new ArrayRealVector(points_scored.length);
      RealMatrix jacobian = new Array2DRowRealMatrix(points_scored.length, 3);

      for (int i = 0; i < measures.length; ++i) {
      double residual = points_scored[i];
      residual -= coeffs.getEntry(0) * height[i];
      residual -= coeffs.getEntry(1) * weight[i];
      residual -= coeffs.getEntry(2) * age[i];
      value.setEntry(i, residual);
      //No idea how to set up the jacobian here
      }

      return new Pair<RealVector, RealMatrix>(value, jacobian);
      };

      double prescribedDistancesToLine = new double[measures.length];
      Arrays.fill(prescribedDistancesToLine, 0);
      double starts = new double {1, 1, 1};

      LeastSquaresProblem problem = new LeastSquaresBuilder().
      start(starts).
      model(distToResidual).
      target(prescribedDistancesToLine).
      lazyEvaluation(false).
      maxEvaluations(1000).
      maxIterations(1000).
      build();
      LeastSquaresOptimizer.Optimum optimum = new LevenbergMarquardtOptimizer().optimize(problem);


      Since I don't know how to make the jacobian values I've just been stabbing in the dark and getting coefficient nowhere near the MATLAB answers. Once I get this part working I know that adding the weights should be a pretty straight forward extra line int the LeastSquaresBuilder.



      Thanks for any help in advance!







      java linear-regression apache-commons-math






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      asked Jan 3 at 17:07









      robkinrobkin

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