Error in importing 3D mesh generated from gmsh into fipy
I am having a lot trouble importing 3D mesh from gmsh to fipy. I have looked through all the questions regarding gmsh and fipy on this forum, but unfortunately I didn't find a similar topic.
I am importing a 3D cylindrical mesh generated by gmsh 4.0 into FiPy. I am currently using python 2.7, and my operation system is Windows 10, 64-bit.
According to fipy manual, the Gmsh3D function should convert the gmsh mesh into a fipy mesh, and thus I wrote:
from fipy import *
mesh = Gmsh3D('C:UsersWilliamDocumentsPython Scriptscylinder3.msh')
In addition, my Gmsh exe, the mesh (cylinder.msh) as well as my python code are all located in the same directory.
However, I kept getting "[Error 32] The process cannot access the file because it is being used by another process". I am attaching the full error message below. Anyone experienced and have solved this issue? Any pointer is appreciated. Thanks in advance!
Full error message:
runfile('C:/Users/William/Documents/Python Scripts/cylinder1.py', wdir='C:/Users/William/Documents/Python Scripts')
Traceback (most recent call last):
File "<ipython-input-1-c2ebfb9899c3>", line 1, in <module>
runfile('C:/Users/William/Documents/Python Scripts/cylinder1.py', wdir='C:/Users/William/Documents/Python Scripts')
File "C:UsersWilliamAnaconda2libsite-packagesspyder_kernelscustomizespydercustomize.py", line 668, in runfile
execfile(filename, namespace)
File "C:UsersWilliamAnaconda2libsite-packagesspyder_kernelscustomizespydercustomize.py", line 93, in execfile
exec(compile(scripttext, filename, 'exec'), glob, loc)
File "C:/Users/William/Documents/Python Scripts/cylinder1.py", line 23, in <module>
mesh = Gmsh3D('C:UsersWilliamDocumentsPython Scriptscylinder3.msh')
File "C:UsersWilliamAnaconda2libsite-packagesfipymeshesgmshMesh.py", line 1944, in __init__
self._orderedCellVertexIDs_data) = self.mshFile.read()
File "C:UsersWilliamAnaconda2libsite-packagesfipymeshesgmshMesh.py", line 853, in read
os.unlink(self.elemsPath)
WindowsError: [Error 32] The process cannot access the file because it is being used by another process: 'c:\users\william\appdata\local\temp\tmp1bhyl6Elements'
python mesh fipy
edited Dec 28 '18 at 8:14
рüффп
3,328145391
asked Dec 28 '18 at 7:39
William YeWilliam Ye
1
add a comment |
I am having a lot trouble importing 3D mesh from gmsh to fipy. I have looked through all the questions regarding gmsh and fipy on this forum, but unfortunately I didn't find a similar topic.
I am importing a 3D cylindrical mesh generated by gmsh 4.0 into FiPy. I am currently using python 2.7, and my operation system is Windows 10, 64-bit.
According to fipy manual, the Gmsh3D function should convert the gmsh mesh into a fipy mesh, and thus I wrote:
from fipy import *
mesh = Gmsh3D('C:UsersWilliamDocumentsPython Scriptscylinder3.msh')
In addition, my Gmsh exe, the mesh (cylinder.msh) as well as my python code are all located in the same directory.
However, I kept getting "[Error 32] The process cannot access the file because it is being used by another process". I am attaching the full error message below. Anyone experienced and have solved this issue? Any pointer is appreciated. Thanks in advance!
Full error message:
runfile('C:/Users/William/Documents/Python Scripts/cylinder1.py', wdir='C:/Users/William/Documents/Python Scripts')
Traceback (most recent call last):
File "<ipython-input-1-c2ebfb9899c3>", line 1, in <module>
runfile('C:/Users/William/Documents/Python Scripts/cylinder1.py', wdir='C:/Users/William/Documents/Python Scripts')
File "C:UsersWilliamAnaconda2libsite-packagesspyder_kernelscustomizespydercustomize.py", line 668, in runfile
execfile(filename, namespace)
File "C:UsersWilliamAnaconda2libsite-packagesspyder_kernelscustomizespydercustomize.py", line 93, in execfile
exec(compile(scripttext, filename, 'exec'), glob, loc)
File "C:/Users/William/Documents/Python Scripts/cylinder1.py", line 23, in <module>
mesh = Gmsh3D('C:UsersWilliamDocumentsPython Scriptscylinder3.msh')
File "C:UsersWilliamAnaconda2libsite-packagesfipymeshesgmshMesh.py", line 1944, in __init__
self._orderedCellVertexIDs_data) = self.mshFile.read()
File "C:UsersWilliamAnaconda2libsite-packagesfipymeshesgmshMesh.py", line 853, in read
os.unlink(self.elemsPath)
WindowsError: [Error 32] The process cannot access the file because it is being used by another process: 'c:\users\william\appdata\local\temp\tmp1bhyl6Elements'
python mesh fipy
edited Dec 28 '18 at 8:14
рüффп
3,328145391
asked Dec 28 '18 at 7:39
William YeWilliam Ye
1
1
Do you have any software that's somehow managing to access the temporary file immediately after it's being created (like an antivirus suite)?
– Blender
Dec 28 '18 at 8:23
add a comment |
I am having a lot trouble importing 3D mesh from gmsh to fipy. I have looked through all the questions regarding gmsh and fipy on this forum, but unfortunately I didn't find a similar topic.
I am importing a 3D cylindrical mesh generated by gmsh 4.0 into FiPy. I am currently using python 2.7, and my operation system is Windows 10, 64-bit.
According to fipy manual, the Gmsh3D function should convert the gmsh mesh into a fipy mesh, and thus I wrote:
from fipy import *
mesh = Gmsh3D('C:UsersWilliamDocumentsPython Scriptscylinder3.msh')
In addition, my Gmsh exe, the mesh (cylinder.msh) as well as my python code are all located in the same directory.
However, I kept getting "[Error 32] The process cannot access the file because it is being used by another process". I am attaching the full error message below. Anyone experienced and have solved this issue? Any pointer is appreciated. Thanks in advance!
Full error message:
runfile('C:/Users/William/Documents/Python Scripts/cylinder1.py', wdir='C:/Users/William/Documents/Python Scripts')
Traceback (most recent call last):
File "<ipython-input-1-c2ebfb9899c3>", line 1, in <module>
runfile('C:/Users/William/Documents/Python Scripts/cylinder1.py', wdir='C:/Users/William/Documents/Python Scripts')
File "C:UsersWilliamAnaconda2libsite-packagesspyder_kernelscustomizespydercustomize.py", line 668, in runfile
execfile(filename, namespace)
File "C:UsersWilliamAnaconda2libsite-packagesspyder_kernelscustomizespydercustomize.py", line 93, in execfile
exec(compile(scripttext, filename, 'exec'), glob, loc)
File "C:/Users/William/Documents/Python Scripts/cylinder1.py", line 23, in <module>
mesh = Gmsh3D('C:UsersWilliamDocumentsPython Scriptscylinder3.msh')
File "C:UsersWilliamAnaconda2libsite-packagesfipymeshesgmshMesh.py", line 1944, in __init__
self._orderedCellVertexIDs_data) = self.mshFile.read()
File "C:UsersWilliamAnaconda2libsite-packagesfipymeshesgmshMesh.py", line 853, in read
os.unlink(self.elemsPath)
WindowsError: [Error 32] The process cannot access the file because it is being used by another process: 'c:\users\william\appdata\local\temp\tmp1bhyl6Elements'
python mesh fipy
edited Dec 28 '18 at 8:14
рüффп
3,328145391
asked Dec 28 '18 at 7:39
William YeWilliam Ye
1
I am having a lot trouble importing 3D mesh from gmsh to fipy. I have looked through all the questions regarding gmsh and fipy on this forum, but unfortunately I didn't find a similar topic.
I am importing a 3D cylindrical mesh generated by gmsh 4.0 into FiPy. I am currently using python 2.7, and my operation system is Windows 10, 64-bit.
According to fipy manual, the Gmsh3D function should convert the gmsh mesh into a fipy mesh, and thus I wrote:
from fipy import *
mesh = Gmsh3D('C:UsersWilliamDocumentsPython Scriptscylinder3.msh')
In addition, my Gmsh exe, the mesh (cylinder.msh) as well as my python code are all located in the same directory.
However, I kept getting "[Error 32] The process cannot access the file because it is being used by another process". I am attaching the full error message below. Anyone experienced and have solved this issue? Any pointer is appreciated. Thanks in advance!
Full error message:
runfile('C:/Users/William/Documents/Python Scripts/cylinder1.py', wdir='C:/Users/William/Documents/Python Scripts')
Traceback (most recent call last):
File "<ipython-input-1-c2ebfb9899c3>", line 1, in <module>
runfile('C:/Users/William/Documents/Python Scripts/cylinder1.py', wdir='C:/Users/William/Documents/Python Scripts')
File "C:UsersWilliamAnaconda2libsite-packagesspyder_kernelscustomizespydercustomize.py", line 668, in runfile
execfile(filename, namespace)
File "C:UsersWilliamAnaconda2libsite-packagesspyder_kernelscustomizespydercustomize.py", line 93, in execfile
exec(compile(scripttext, filename, 'exec'), glob, loc)
File "C:/Users/William/Documents/Python Scripts/cylinder1.py", line 23, in <module>
mesh = Gmsh3D('C:UsersWilliamDocumentsPython Scriptscylinder3.msh')
File "C:UsersWilliamAnaconda2libsite-packagesfipymeshesgmshMesh.py", line 1944, in __init__
self._orderedCellVertexIDs_data) = self.mshFile.read()
File "C:UsersWilliamAnaconda2libsite-packagesfipymeshesgmshMesh.py", line 853, in read
os.unlink(self.elemsPath)
WindowsError: [Error 32] The process cannot access the file because it is being used by another process: 'c:\users\william\appdata\local\temp\tmp1bhyl6Elements'
python mesh fipy
python mesh fipy
edited Dec 28 '18 at 8:14
рüффп
3,328145391
asked Dec 28 '18 at 7:39
William YeWilliam Ye
1
edited Dec 28 '18 at 8:14
рüффп
3,328145391
asked Dec 28 '18 at 7:39
William YeWilliam Ye
1
edited Dec 28 '18 at 8:14
рüффп
3,328145391
edited Dec 28 '18 at 8:14
рüффп
3,328145391
edited Dec 28 '18 at 8:14
рüффп
3,328145391
3,328145391
asked Dec 28 '18 at 7:39
William YeWilliam Ye
1
asked Dec 28 '18 at 7:39
William YeWilliam Ye
1
asked Dec 28 '18 at 7:39
William YeWilliam Ye
1
1
1
Do you have any software that's somehow managing to access the temporary file immediately after it's being created (like an antivirus suite)?
– Blender
Dec 28 '18 at 8:23
add a comment |
1
Do you have any software that's somehow managing to access the temporary file immediately after it's being created (like an antivirus suite)?
– Blender
Dec 28 '18 at 8:23
1
1
Do you have any software that's somehow managing to access the temporary file immediately after it's being created (like an antivirus suite)?
– Blender
Dec 28 '18 at 8:23
Do you have any software that's somehow managing to access the temporary file immediately after it's being created (like an antivirus suite)?
– Blender
Dec 28 '18 at 8:23
add a comment |
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Do you have any software that's somehow managing to access the temporary file immediately after it's being created (like an antivirus suite)?
– Blender
Dec 28 '18 at 8:23