Download data from HaploReg db, by using HaploR package
This is a function from HaploR package:
queryHaploreg(query = NULL, file = NULL, study = NULL, ldThresh = 0.8,
ldPop = "EUR", epi = "vanilla", cons = "siphy", genetypes = "gencode",
url = Haploreg.settings[["base.url"]], timeout = 100,
encoding = "UTF-8", querySNP = FALSE, fields = NULL, verbose = FALSE)
In HaploReg I can download the data by two methods: by SNPs IDs and by region (chrN: start-end). I can not find in documentation any information about download by using the "region criteria". Maybe anybody knows how to do it? Or, if it is not possible just tell me about it?
r database bioconductor
edited Jan 3 at 11:12
PoGibas
17.7k154779
asked Jan 3 at 10:13
DariaDaria
11
add a comment |
This is a function from HaploR package:
queryHaploreg(query = NULL, file = NULL, study = NULL, ldThresh = 0.8,
ldPop = "EUR", epi = "vanilla", cons = "siphy", genetypes = "gencode",
url = Haploreg.settings[["base.url"]], timeout = 100,
encoding = "UTF-8", querySNP = FALSE, fields = NULL, verbose = FALSE)
In HaploReg I can download the data by two methods: by SNPs IDs and by region (chrN: start-end). I can not find in documentation any information about download by using the "region criteria". Maybe anybody knows how to do it? Or, if it is not possible just tell me about it?
r database bioconductor
edited Jan 3 at 11:12
PoGibas
17.7k154779
asked Jan 3 at 10:13
DariaDaria
11
add a comment |
This is a function from HaploR package:
queryHaploreg(query = NULL, file = NULL, study = NULL, ldThresh = 0.8,
ldPop = "EUR", epi = "vanilla", cons = "siphy", genetypes = "gencode",
url = Haploreg.settings[["base.url"]], timeout = 100,
encoding = "UTF-8", querySNP = FALSE, fields = NULL, verbose = FALSE)
In HaploReg I can download the data by two methods: by SNPs IDs and by region (chrN: start-end). I can not find in documentation any information about download by using the "region criteria". Maybe anybody knows how to do it? Or, if it is not possible just tell me about it?
r database bioconductor
edited Jan 3 at 11:12
PoGibas
17.7k154779
asked Jan 3 at 10:13
DariaDaria
11
This is a function from HaploR package:
queryHaploreg(query = NULL, file = NULL, study = NULL, ldThresh = 0.8,
ldPop = "EUR", epi = "vanilla", cons = "siphy", genetypes = "gencode",
url = Haploreg.settings[["base.url"]], timeout = 100,
encoding = "UTF-8", querySNP = FALSE, fields = NULL, verbose = FALSE)
In HaploReg I can download the data by two methods: by SNPs IDs and by region (chrN: start-end). I can not find in documentation any information about download by using the "region criteria". Maybe anybody knows how to do it? Or, if it is not possible just tell me about it?
r database bioconductor
r database bioconductor
edited Jan 3 at 11:12
PoGibas
17.7k154779
asked Jan 3 at 10:13
DariaDaria
11
edited Jan 3 at 11:12
PoGibas
17.7k154779
asked Jan 3 at 10:13
DariaDaria
11
edited Jan 3 at 11:12
PoGibas
17.7k154779
edited Jan 3 at 11:12
PoGibas
17.7k154779
edited Jan 3 at 11:12
PoGibas
17.7k154779
17.7k154779
asked Jan 3 at 10:13
DariaDaria
11
asked Jan 3 at 10:13
DariaDaria
11
asked Jan 3 at 10:13
DariaDaria
11
11
add a comment |
add a comment |
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